gatk-software
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gatk-software [2021/09/06 11:36] – aorth | gatk-software [2023/05/11 09:59] (current) – aorth | ||
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===== Information ===== | ===== Information ===== | ||
- | * Latest Version: 4.2.2.0 | + | * Latest Version: 4.4.0.0 |
* Added: May, 2014 | * Added: May, 2014 | ||
- | * Updated: | + | * Updated: |
* Link: https:// | * Link: https:// | ||
===== Usage ===== | ===== Usage ===== | ||
- | See which versions | + | See which versions are available: |
< | < | ||
Load one version into your environment and run it: | Load one version into your environment and run it: | ||
- | < | + | < |
$ gatk</ | $ gatk</ | ||
+ | |||
+ | **Note:** The HaplotypeCaller step can scale to multiple CPUs/ | ||
===== Installation ====== | ===== Installation ====== | ||
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< | < | ||
- | $ wget https:// | + | $ wget https:// |
- | $ unzip gatk-4.2.2.0.zip | + | $ unzip gatk-4.4.0.0.zip |
- | $ sudo cp -r gatk-4.2.2.0 / | + | $ sed -i ' |
+ | $ sudo cp -r gatk-4.4.0.0 / | ||
+ | |||
+ | **Note (2023-05-11): |
gatk-software.1630928175.txt.gz · Last modified: 2021/09/06 11:36 by aorth