gatk-software
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gatk-software [2018/10/15 13:25] – aorth | gatk-software [2023/05/11 09:59] (current) – aorth | ||
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===== Information ===== | ===== Information ===== | ||
- | * Latest Version: 4.0.10.1 | + | * Latest Version: |
* Added: May, 2014 | * Added: May, 2014 | ||
- | * Updated: | + | * Updated: |
- | * Link: https://software.broadinstitute.org/gatk/ | + | * Link: https://github.com/broadinstitute/ |
===== Usage ===== | ===== Usage ===== | ||
- | See which versions | + | See which versions are available: |
< | < | ||
Load one version into your environment and run it: | Load one version into your environment and run it: | ||
- | < | + | < |
$ gatk</ | $ gatk</ | ||
+ | |||
+ | **Note:** The HaplotypeCaller step can scale to multiple CPUs/ | ||
===== Installation ====== | ===== Installation ====== | ||
Line 23: | Line 25: | ||
< | < | ||
- | $ wget https:// | + | $ wget https:// |
- | $ unzip gatk-4.0.10.1.zip | + | $ unzip gatk-4.4.0.0.zip |
- | $ sudo cp -r gatk-4.0.10.1 / | + | $ sed -i ' |
+ | $ sudo cp -r gatk-4.4.0.0 / | ||
+ | |||
+ | **Note (2023-05-11): |
gatk-software.1539609930.txt.gz · Last modified: 2018/10/15 13:25 by aorth