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gatk-software [2021/09/16 13:38] – aorthgatk-software [2022/11/21 07:56] – aorth
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 ===== Information ===== ===== Information =====
  
-  * Latest Version: 4.2.2.0+  * Latest Version: 4.3.0.0
   * Added: May, 2014   * Added: May, 2014
-  * Updated: September, 2021+  * Updated: September, 2022
   * Link: https://github.com/broadinstitute/gatk   * Link: https://github.com/broadinstitute/gatk
  
 ===== Usage ===== ===== Usage =====
  
-See which versions of GATK are available:+See which versions are available:
 <code>$ module avail gatk</code> <code>$ module avail gatk</code>
  
 Load one version into your environment and run it: Load one version into your environment and run it:
-<code>$ module load gatk/4.2.2.0+<code>$ module load gatk/4.3.0.0
 $ gatk</code> $ gatk</code>
  
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 <code>$ cd /tmp <code>$ cd /tmp
-$ wget https://github.com/broadinstitute/gatk/releases/download/4.2.2.0/gatk-4.2.2.0.zip +$ wget https://github.com/broadinstitute/gatk/releases/download/4.3.0.0/gatk-4.3.0.0.zip 
-$ unzip gatk-4.2.2.0.zip +$ unzip gatk-4.3.0.0.zip 
-$ sudo cp -r gatk-4.2.2.0 /export/apps/gatk/4.2.2.0</code>+$ sudo cp -r gatk-4.3.0.0 /export/apps/gatk/4.3.0.0</code>
gatk-software.txt · Last modified: 2023/05/11 09:59 by aorth