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--- gatk-software [2021/09/06 11:36] – aorth
+++ gatk-software [2021/09/16 13:38] – aorth
@@ Line 18: / Line 18: @@
 <code>$ module load gatk/4.2.2.0
 $ gatk</code>
+**Note:** The HaplotypeCaller step can scale to multiple CPUs/threads. Please use the ''-nct'' option to set the number of threads launched by GATK. This number should be the same number of CPUs requested in your SLURM batch job.
 ===== Installation ======