User Tools

Site Tools



This shows you the differences between two versions of the page.

Link to this comparison view

gaas [2010/02/09 12:51]
gaas [2010/05/22 14:19]
Line 1: Line 1:
-GAAS (Genome relative Abundance and Average Size) is a bioinformatic tool to calculate accurate community composition and average genome size in metagenomes by using BLAST, advanced parsing of hits and correction of genome length bias. 
-Install in: <code>/paracel/paracel/biosoft/GAAS</code> 
-Modified it to work with Paracel blast.  
-Make changes in: Makefile.PL  
-# External GAAS dependency: NCBI BLAST 
-requires_external_bin 'pb blastall'; 
-requires_external_bin 'pb formatdb'; 
-and /mnt/export/paracel/biosoft/GAAS/lib/ 
gaas.txt · Last modified: 2010/05/22 14:19 (external edit)