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gaas [2010/02/09 12:51]
172.26.15.184
gaas [2010/05/22 14:19]
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-====GAAS==== 
----- 
-GAAS (Genome relative Abundance and Average Size) is a bioinformatic tool to calculate accurate community composition and average genome size in metagenomes by using BLAST, advanced parsing of hits and correction of genome length bias. 
  
-http://www.ncbi.nlm.nih.gov/pubmed/20011103 
- 
-Install in: <code>/paracel/paracel/biosoft/GAAS</code> 
- 
-Modified it to work with Paracel blast.  
-Make changes in: Makefile.PL  
- 
-<code> 
-# External GAAS dependency: NCBI BLAST 
-requires_external_bin 'pb blastall'; 
-requires_external_bin 'pb formatdb'; 
-</code> 
- 
-and /mnt/export/paracel/biosoft/GAAS/lib/GAAS.pm 
gaas.txt · Last modified: 2010/05/22 14:19 (external edit)