funannotate-software
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funannotate-software [2022/07/05 11:40] – aorth | funannotate-software [2023/04/20 21:21] (current) – aorth | ||
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===== Information ===== | ===== Information ===== | ||
- | * Version: 1.8.11 | + | * Version: 1.8.15 |
* Added: August, 2021 | * Added: August, 2021 | ||
- | * Updated: | + | * Updated: |
* Link: https:// | * Link: https:// | ||
===== Usage ===== | ===== Usage ===== | ||
- | See versions that are available: | + | Funannotate |
- | < | + | |
- | + | ||
- | Load a particular version into your environment and run it: | + | |
- | + | ||
- | < | + | |
- | $ funannotate --help</ | + | |
- | + | ||
- | Note: funannotate | + | |
< | < | ||
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#SBATCH -J funannotate | #SBATCH -J funannotate | ||
- | # Set up environment | + | # Set up output directory |
WORKDIR=/ | WORKDIR=/ | ||
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singularity run \ | singularity run \ | ||
--bind " | --bind " | ||
- | / | + | / |
funannotate train --input " | funannotate train --input " | ||
--out " | --out " | ||
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Notes from the sysadmin during installation: | Notes from the sysadmin during installation: | ||
- | < | + | < |
- | $ singularity pull / | + | $ mkdir $SINGULARITY_TMPDIR |
- | $ sudo mkdir -p / | + | $ singularity pull / |
- | $ sudo / | + | $ sudo mkdir -p / |
+ | $ sudo cp / | ||
Run built-in tests: | Run built-in tests: | ||
< | < | ||
- | / | + | / |
funannotate test -t all --cpus 10</ | funannotate test -t all --cpus 10</ |
funannotate-software.1657021255.txt.gz · Last modified: 2022/07/05 11:40 by aorth