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funannotate-software [2022/07/05 11:42] aorthfunannotate-software [2022/07/05 11:43] aorth
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 #SBATCH -J funannotate #SBATCH -J funannotate
  
-# Set up environment in scratch+# Set up output directory in scratch
 WORKDIR=/var/scratch/aorth/funannotate/2022-06-09 WORKDIR=/var/scratch/aorth/funannotate/2022-06-09
  
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 Notes from the sysadmin during installation: Notes from the sysadmin during installation:
  
-<code>export SINGULARITY_TMPDIR=/var/scratch/aorth+<code>export SINGULARITY_TMPDIR=/var/scratch/aorth
 $ singularity pull /var/scratch/funannotate.sif docker://nextgenusfs/funannotate:v1.8.11 $ singularity pull /var/scratch/funannotate.sif docker://nextgenusfs/funannotate:v1.8.11
 $ sudo mkdir -p /export/apps/funannotate/1.8.11 $ sudo mkdir -p /export/apps/funannotate/1.8.11
funannotate-software.txt · Last modified: 2023/04/20 21:21 by aorth