Differences

This shows you the differences between two versions of the page.

--- funannotate-software [2022/07/05 11:43] – aorth
+++ funannotate-software [2023/04/20 21:21] (current) – aorth
@@ Line 4: / Line 4: @@
 ===== Information =====
-  * Version: 1.8.11
+  * Version: 1.8.15
   * Added: August, 2021
-  * Updated: June, 2022
+  * Updated: April, 2023
   * Link: https://github.com/nextgenusfs/funannotate
@@ Line 32: / Line 32: @@
 singularity run \
             --bind "$genome:$genome","$rnaseq_ont:$rnaseq_ont","$WORKDIR:$WORKDIR" \
-            /export/apps/funannotate/1.8.11/funannotate.sif \
+            /export/apps/funannotate/1.8.15/funannotate.sif \
             funannotate train --input "$genome" \
             --out "$WORKDIR" \
@@ Line 46: / Line 46: @@
 <code>$ export SINGULARITY_TMPDIR=/var/scratch/aorth
-$ singularity pull /var/scratch/funannotate.sif docker://nextgenusfs/funannotate:v1.8.11
+$ mkdir $SINGULARITY_TMPDIR
-$ sudo mkdir -p /export/apps/funannotate/1.8.11
+$ singularity pull /var/scratch/funannotate.sif docker://nextgenusfs/funannotate:v1.8.15
-$ sudo /var/scratch/funannotate.sif /export/apps/funannotate/1.8.11</code>
+$ sudo mkdir -p /export/apps/funannotate/1.8.15
+$ sudo cp /var/scratch/funannotate.sif /export/apps/funannotate/1.8.15</code>
 Run built-in tests:
 <code>singularity run \
-            /export/apps/funannotate/1.8.11/funannotate.sif \
+            /export/apps/funannotate/1.8.15/funannotate.sif \
             funannotate test -t all --cpus 10</code>