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funannotate-software [2022/07/05 11:43] aorthfunannotate-software [2023/04/20 21:21] (current) aorth
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 ===== Information ===== ===== Information =====
  
-  * Version: 1.8.11+  * Version: 1.8.15
   * Added: August, 2021   * Added: August, 2021
-  * Updated: June2022+  * Updated: April2023
   * Link: https://github.com/nextgenusfs/funannotate   * Link: https://github.com/nextgenusfs/funannotate
  
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 singularity run \ singularity run \
             --bind "$genome:$genome","$rnaseq_ont:$rnaseq_ont","$WORKDIR:$WORKDIR" \             --bind "$genome:$genome","$rnaseq_ont:$rnaseq_ont","$WORKDIR:$WORKDIR" \
-            /export/apps/funannotate/1.8.11/funannotate.sif \+            /export/apps/funannotate/1.8.15/funannotate.sif \
             funannotate train --input "$genome" \             funannotate train --input "$genome" \
             --out "$WORKDIR" \             --out "$WORKDIR" \
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 <code>$ export SINGULARITY_TMPDIR=/var/scratch/aorth <code>$ export SINGULARITY_TMPDIR=/var/scratch/aorth
-$ singularity pull /var/scratch/funannotate.sif docker://nextgenusfs/funannotate:v1.8.11 +$ mkdir $SINGULARITY_TMPDIR 
-$ sudo mkdir -p /export/apps/funannotate/1.8.11 +$ singularity pull /var/scratch/funannotate.sif docker://nextgenusfs/funannotate:v1.8.15 
-$ sudo /var/scratch/funannotate.sif /export/apps/funannotate/1.8.11</code>+$ sudo mkdir -p /export/apps/funannotate/1.8.15 
 +$ sudo cp /var/scratch/funannotate.sif /export/apps/funannotate/1.8.15</code>
  
 Run built-in tests: Run built-in tests:
  
 <code>singularity run \ <code>singularity run \
-            /export/apps/funannotate/1.8.11/funannotate.sif \+            /export/apps/funannotate/1.8.15/funannotate.sif \
             funannotate test -t all --cpus 10</code>             funannotate test -t all --cpus 10</code>
funannotate-software.txt · Last modified: 2023/04/20 21:21 by aorth