ILRI Research Computing

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====== FreeBayes ======

Bayesian haplotype-based polymorphism discovery and genotyping

===== Information =====

  * Version: 1.3.4
  * Added: August, 2021
  * Link: https://github.com/freebayes/freebayes

===== Usage =====

See which versions of freebayes are available:
<code>$ module avail freebayes</code>

Load one version into your environment and run it:
<code>$ module load freebayes/1.3.4
$ freebayes -h</code>

===== Installation ======

Notes from the sysadmin during installation:

<code>$ cd /tmp
$ wget https://github.com/freebayes/freebayes/releases/download/v1.3.4/freebayes-1.3.4-linux-static-AMD64.gz
$ gunzip freebayes-1.3.4-linux-static-AMD64.gz
$ sudo mkdir -p /export/apps/freebayes/1.3.4/bin
$ chmod +x freebayes-1.3.4-linux-static-AMD64
$ sudo cp freebayes-1.3.4-linux-static-AMD64 /export/apps/freebayes/1.3.4/bin/freebayes</code>