Differences

This shows you the differences between two versions of the page.

--- freebayes-software [2016/03/22 08:15] – created joguya
+++ freebayes-software [2021/08/11 09:20] (current) – aorth
@@ Line 5: / Line 5: @@
 ===== Information =====
-  * Version: 1.0.2
+  * Version: 1.3.4
-  * Added: March, 2016
+  * Added: August, 2021
-  * Link: https://github.com/ekg/freebayes
+  * Link: https://github.com/freebayes/freebayes
 ===== Usage =====
@@ Line 14: / Line 14: @@
 <code>$ module avail freebayes</code>
-Load freebayes
+Load one version into your environment and run it:
-<code>$ module load freebayes/1.0.2</code>
+<code>$ module load freebayes/1.3.4
+$ freebayes -h</code>
 ===== Installation ======
@@ Line 22: / Line 23: @@
 <code>$ cd /tmp
-$ git clone --recursive git://github.com/ekg/freebayes.git
+$ wget https://github.com/freebayes/freebayes/releases/download/v1.3.4/freebayes-1.3.4-linux-static-AMD64.gz
-$ cd freebayes/
+$ gunzip freebayes-1.3.4-linux-static-AMD64.gz
-$ git checkout v1.0.2
+$ sudo mkdir -p /export/apps/freebayes/1.3.4/bin
-$ make
+$ chmod +x freebayes-1.3.4-linux-static-AMD64
-$ sudo mkdir -p /export/apps/freebayes/1.0.2
+$ sudo cp freebayes-1.3.4-linux-static-AMD64 /export/apps/freebayes/1.3.4/bin/freebayes</code>
-$ sudo cp bin/freebayes bin/bamleftalign /export/apps/freebayes/1.0.2
-</code>