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--- fraggenescan-software [2020/03/15 09:03] – aorth
+++ fraggenescan-software [2020/03/15 09:17] (current) – aorth
@@ Line 7: / Line 7: @@
   * Added: July, 2015
   * Updated: March, 2020
-  * Link: http://omics.informatics.indiana.edu/FragGeneScan/
+  * Link: https://omics.informatics.indiana.edu/FragGeneScan/
 ===== Usage =====
@@ Line 17: / Line 17: @@
 <code>$ module load fraggenescan/1.30
-./run_FragGeneScan.pl -genome=[seq_file_name] -out=[output_file_name] -complete=[1 or 0] -train=[train_file_name] -thread=[num_thread]</code>
+$ run_FragGeneScan.pl -genome=[seq_file_name] -out=[output_file_name] -complete=[1 or 0] -train=[train_file_name] -thread=[num_thread]</code>
 **Note:** Please remember to specify the same number of CPU threads as you have requested in your SBATCH job parameters.
@@ Line 33: / Line 33: @@
 $ make fgs
 $ sudo mkdir -p /export/apps/fraggenescan/1.30
-$ find . -perm /u+x -print -exec chmod  755 '{}' \;
+$ chmod 644 example/* train/* *.h *.c
 $ sudo cp -r . /export/apps/fraggenescan/1.30
 </code>