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fraggenescan-software

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fraggenescan-software [2020/03/15 09:03] – aorthfraggenescan-software [2020/03/15 09:16] – aorth
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 <code>$ module load fraggenescan/1.30 <code>$ module load fraggenescan/1.30
-./run_FragGeneScan.pl -genome=[seq_file_name] -out=[output_file_name] -complete=[1 or 0] -train=[train_file_name] -thread=[num_thread]</code>+$ run_FragGeneScan.pl -genome=[seq_file_name] -out=[output_file_name] -complete=[1 or 0] -train=[train_file_name] -thread=[num_thread]</code>
  
 **Note:** Please remember to specify the same number of CPU threads as you have requested in your SBATCH job parameters. **Note:** Please remember to specify the same number of CPU threads as you have requested in your SBATCH job parameters.
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 $ make fgs $ make fgs
 $ sudo mkdir -p /export/apps/fraggenescan/1.30 $ sudo mkdir -p /export/apps/fraggenescan/1.30
-$ find . -perm /u+x -print -exec chmod  755 '{}' \;+$ chmod 644 example/* train/* *.h *.c
 $ sudo cp -r . /export/apps/fraggenescan/1.30 $ sudo cp -r . /export/apps/fraggenescan/1.30
 </code> </code>
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fraggenescan-software.txt · Last modified: 2020/03/15 09:17 by aorth