fraggenescan-software
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fraggenescan-software [2015/07/06 09:38] – created joguya | fraggenescan-software [2020/03/15 09:17] (current) – aorth | ||
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===== Information ===== | ===== Information ===== | ||
- | * Version: 1.19 | + | * Version: 1.30 |
* Added: July, 2015 | * Added: July, 2015 | ||
- | * Updated: | + | * Updated: |
- | * Link: http:// | + | * Link: https:// |
===== Usage ===== | ===== Usage ===== | ||
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See versions of FragGeneScan which are available: | See versions of FragGeneScan which are available: | ||
< | < | ||
+ | |||
+ | Load one version into your environment and run it: | ||
+ | |||
+ | < | ||
+ | $ run_FragGeneScan.pl -genome=[seq_file_name] -out=[output_file_name] -complete=[1 or 0] -train=[train_file_name] -thread=[num_thread]</ | ||
+ | |||
+ | **Note:** Please remember to specify the same number of CPU threads as you have requested in your SBATCH job parameters. | ||
===== Installation ====== | ===== Installation ====== | ||
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< | < | ||
- | wget "http:// | + | $ cd /tmp |
- | tar -xvf FragGeneScan1.19.tar.gz | + | $ wget 'https:// |
- | cd FragGeneScan1.19 | + | $ tar xf FragGeneScan1.30.tar.gz |
- | scl enable devtoolset-2 bash | + | $ cd FragGeneScan1.30 |
- | make | + | $ scl enable devtoolset-7 bash |
- | make fgs | + | $ make clean |
- | sudo mkdir -p / | + | $ make fgs |
- | find . -perm /u+x -print -exec chmod 755 ' | + | $ sudo mkdir -p / |
- | sudo cp -r . / | + | $ chmod 644 example/* train/* *.h *.c |
+ | $ sudo cp -r . / | ||
</ | </ | ||
- |
fraggenescan-software.txt · Last modified: 2020/03/15 09:17 by aorth