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fasttree-software [2020/08/09 12:47] – aorthfasttree-software [2020/08/09 12:52] – aorth
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 <code>$ module load fasttree/2.1.11 <code>$ module load fasttree/2.1.11
 $ FastTree</code> $ FastTree</code>
 +
 +*Note:* if you're using the multi-threaded ''FastTreeMP'' please specify the number of CPU threads to use with the ''OMP_NUM_THREADS'' environment variable:
 +
 +<code>$ export OMP_NUM_THREADS=3
 +$ FastTreeMP</cod>
 +
 +The number of CPU threads you choose should match the number of CPUs requested in your SLURM SBATCH allocation.
  
 ===== Installation ====== ===== Installation ======
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 <code>$ sudo mkdir -p /export/apps/fasttree/2.1.11/bin <code>$ sudo mkdir -p /export/apps/fasttree/2.1.11/bin
 $ sudo wget http://www.microbesonline.org/fasttree/FastTree -O /export/apps/fasttree/2.1.11/bin/FastTree $ sudo wget http://www.microbesonline.org/fasttree/FastTree -O /export/apps/fasttree/2.1.11/bin/FastTree
-$ sudo chmod +x /export/apps/fasttree/2.1.11/bin/FastTree</code>+$ sudo wget http://meta.microbesonline.org/fasttree/FastTreeMP -O /export/apps/fasttree/2.1.11/bin/FastTreeMP 
 +$ sudo chmod +x /export/apps/fasttree/2.1.11/bin/FastTree*</code>
fasttree-software.txt · Last modified: 2020/08/09 12:52 by aorth