ILRI Research Computing

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====== fastp ======
A tool designed to provide fast all-in-one preprocessing for FastQ files. This tool is developed in C++ with multithreading supported to afford high performance.

===== Information =====

  * Version: 0.22.0
  * Added: September, 2021
  * Link: https://github.com/OpenGene/fastp

===== Usage =====

See versions of fastp that are available:
<code>$ module avail fastp</code>

Load one version into your environment and run it:
<code>$ module load fastp/0.22.0
$ fastp</code>

__Note:__ please use the ''-w'' option to specify the number of CPU threads to use (default is 2). This number should match the number of CPUs you requested in your SLURM job.

===== Installation ======
Notes from the sysadmin during installation.

<code>$ cd /tmp
$ git clone https://github.com/OpenGene/fastp.git -b v0.22.0
$ cd fastp
$ scl enable devtoolset-7 bash
$ make
$ sudo mkdir -p /export/apps/fastp/0.22.0/bin
$ sudo chown -R aorth /export/apps/fastp/0.22.0
$ make install PREFIX=/export/apps/fastp/0.22.0
$ sudo chown -R root:root /export/apps/fastp/0.22.0</code>