User Tools

Site Tools


fastp-software

Differences

This shows you the differences between two versions of the page.

Link to this comparison view

fastp-software [2021/09/06 10:34] – created aorthfastp-software [2025/05/13 10:17] (current) aorth
Line 4: Line 4:
 ===== Information ===== ===== Information =====
  
-  * Version: 0.22.0 +  * Version: 0.24.1 
-  * Added: September2021+  * Added: May2025
   * Link: https://github.com/OpenGene/fastp   * Link: https://github.com/OpenGene/fastp
  
 ===== Usage ===== ===== Usage =====
  
-See versions of fastp that are available:+See versions that are available:
 <code>$ module avail fastp</code> <code>$ module avail fastp</code>
  
 Load one version into your environment and run it: Load one version into your environment and run it:
-<code>$ module load fastp/0.22.0+<code>$ module load fastp/0.24.1
 $ fastp</code> $ fastp</code>
  
Line 23: Line 23:
  
 <code>$ cd /tmp <code>$ cd /tmp
-$ git clone https://github.com/OpenGene/fastp.git -b v0.22.0+$ git clone https://github.com/OpenGene/fastp.git -b v0.24.1
 $ cd fastp $ cd fastp
-scl enable devtoolset-7 bash +sudo dnf install isa-l-devel libdeflate-devel 
-$ make +$ sudo mkdir -p /export/apps/fastp/0.24.1/bin 
-$ sudo mkdir -p /export/apps/fastp/0.22.0/bin +$ sudo chown -R aorth /export/apps/fastp/0.24.1 
-$ sudo chown -R aorth /export/apps/fastp/0.22.0 +$ make install PREFIX=/export/apps/fastp/0.24.1 
-$ make install PREFIX=/export/apps/fastp/0.22.0 +$ sudo chown -R root:root /export/apps/fastp/0.24.1</code>
-$ sudo chown -R root:root /export/apps/fastp/0.22.0</code>+
fastp-software.txt · Last modified: 2025/05/13 10:17 by aorth