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emboss-software [2015/09/04 12:16]
aorth [Usage]
emboss-software [2017/12/24 14:08] (current)
aorth
Line 9: Line 9:
 ===== Usage ===== ===== Usage =====
  
-=== See versions of emboss which are available ===+See versions of emboss which are available:
 <code>$ module avail emboss</code> <code>$ module avail emboss</code>
 +
 +Load one version into your environment:
 +<code>$ module load emboss/6.6.0</code>
  
 ===== Installation ====== ===== Installation ======
 Notes from the sysadmin during installation: Notes from the sysadmin during installation:
  
-<code>sudo yum install libpng-devel gd-devel zlib-devel +<code>$ cd /tmp 
-scl enable devtoolset-1.1 bash +wget ftp://emboss.open-bio.org/pub/EMBOSS/EMBOSS-6.6.0.tar.gz 
-wget ftp://emboss.open-bio.org/pub/EMBOSS/EMBOSS-6.6.0.tar.gz +tar xf EMBOSS-6.6.0.tar.gz 
-tar xf EMBOSS-6.6.0.tar.gz -C /tmp +cd EMBOSS-6.6.0 
-cd /tmp/EMBOSS-6.6.0 +./configure --prefix=/export/apps/emboss/6.6.0 
-./configure --prefix=/export/apps/emboss/6.6.0 +make -j4 
-make -j4 +$ sudo mv /export/apps/emboss/6.6.0 /export/apps/emboss/6.6.0.old 
-sudo mkdir /export/apps/emboss/6.6.0 +sudo mkdir /export/apps/emboss/6.6.0 
-sudo chown aorth:aorth /export/apps/emboss/6.6.0 +sudo chown aorth:aorth /export/apps/emboss/6.6.0 
-make install +make install 
-sudo chown -R root:root /export/apps/emboss/6.6.0</code>+sudo chown -R root:root /export/apps/emboss/6.6.0</code>
emboss-software.1441368976.txt.gz · Last modified: 2015/09/04 12:16 by aorth