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ea-utils-software [2015/10/08 12:48] – created joguyaea-utils-software [2018/11/18 09:14] (current) aorth
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-====== pairfq ====== +====== ea-utils ====== 
-Sync paired-end FASTA/Q files and keep singleton reads.+Command-line tools for processing biological sequencing data. Barcode demultiplexing, adapter trimming, etc. Primarily written to support an Illumina based pipeline but should work with any FASTQs.
  
 ===== Information ===== ===== Information =====
  
-  * Version: 0.14.4+  * Version: 1.04.807
   * Added: October, 2015   * Added: October, 2015
-  * Link: https://github.com/sestaton/Pairfq+  * Updated: November, 2018 
 +  * Link: https://expressionanalysis.github.io/ea-utils/
  
 ===== Usage ===== ===== Usage =====
  
-See versions of pairfq which are available: +See available versions
-<code>$ module avail pairfq</code>+<code>$ module avail ea-utils</code>
  
-Load and run pairfq+Load one version into your environment
-<code>$ module load pairfq/0.14.+<code>$ module load ea-utils/1.04.807</code>
-$ ruby</code>+
  
 ===== Installation ====== ===== Installation ======
 Notes from the sysadmin during installation: Notes from the sysadmin during installation:
  
-<code>$ wget https://github.com/sestaton/Pairfq/archive/v0.14.4.tar.gz +<code>$ cd /tmp 
-tar -xvf v0.14.4.tar.gz +$ wget https://github.com/ExpressionAnalysis/ea-utils/archive/1.04.807.tar.gz 
-$ cd Pairfq-0.14.4 +sudo yum install gsl-devel perl-Test-Base 
-$ sudo mkdir -p /export/apps/pairfq/0.14.+$ tar xf 1.04.807.tar.gz 
-$ sudo chown -R joguya:joguya /export/apps/pairfq/0.14.4 +$ cd ea-utils-1.04.807/clipper
-$ module load perl/5.16.3.1603 +
-$ perl Makefile.PL PREFIX=/export/apps/pairfq/0.14.4+
 $ make $ make
-make test +sudo mkdir -p /export/apps/ea-utils/1.04.807 
-$ make install +$ sudo chown aorth /export/apps/ea-utils/1.04.807 
-$ sudo chown -R root:root /export/apps/pairfq/0.14.+$ make install PREFIX=/export/apps/ea-utils/1.04.807 
-</code>+$ sudo yum remove gsl-devel perl-Test-Base 
 +$ sudo chown -R root:root /export/apps/ea-utils/1.04.807</code>
ea-utils-software.1444308496.txt.gz · Last modified: 2015/10/08 12:48 by joguya