Differences

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--- ea-utils-software [2015/10/08 12:49] – [Usage] joguya
+++ ea-utils-software [2018/11/18 09:14] (current) – aorth
@@ Line 1: / Line 1: @@
-====== pairfq ======
+====== ea-utils ======
-Sync paired-end FASTA/Q files and keep singleton reads.
+Command-line tools for processing biological sequencing data. Barcode demultiplexing, adapter trimming, etc. Primarily written to support an Illumina based pipeline - but should work with any FASTQs.
 ===== Information =====
-  * Version: 0.14.4
+  * Version: 1.04.807
   * Added: October, 2015
-  * Link: https://github.com/sestaton/Pairfq
+  * Updated: November, 2018
+  * Link: https://expressionanalysis.github.io/ea-utils/
 ===== Usage =====
-See versions of pairfq which are available:
+See available versions:
-<code>$ module avail pairfq</code>
+<code>$ module avail ea-utils</code>
-Load and run pairfq:
+Load one version into your environment:
-<code>$ module load pairfq/0.14.4
+<code>$ module load ea-utils/1.04.807</code>
-$ pairfq</code>
 ===== Installation ======
 Notes from the sysadmin during installation:
-<code>$ wget https://github.com/sestaton/Pairfq/archive/v0.14.4.tar.gz
+<code>$ cd /tmp
-$ tar -xvf v0.14.4.tar.gz
+$ wget https://github.com/ExpressionAnalysis/ea-utils/archive/1.04.807.tar.gz
-$ cd Pairfq-0.14.4
+$ sudo yum install gsl-devel perl-Test-Base
-$ sudo mkdir -p /export/apps/pairfq/0.14.4
+$ tar xf 1.04.807.tar.gz
-$ sudo chown -R joguya:joguya /export/apps/pairfq/0.14.4
+$ cd ea-utils-1.04.807/clipper
-$ module load perl/5.16.3.1603
-$ perl Makefile.PL PREFIX=/export/apps/pairfq/0.14.4
 $ make
-$ make test
+$ sudo mkdir -p /export/apps/ea-utils/1.04.807
-$ make install
+$ sudo chown aorth /export/apps/ea-utils/1.04.807
-$ sudo chown -R root:root /export/apps/pairfq/0.14.4
+$ make install PREFIX=/export/apps/ea-utils/1.04.807
-</code>
+$ sudo yum remove gsl-devel perl-Test-Base
+$ sudo chown -R root:root /export/apps/ea-utils/1.04.807</code>