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--- ea-utils-software [2015/10/08 12:49] – [Usage] joguya
+++ ea-utils-software [2015/10/08 12:51] – joguya
@@ Line 1: / Line 1: @@
-====== pairfq ======
+====== ea-utils ======
-Sync paired-end FASTA/Q files and keep singleton reads.
+FASTQ processing utilities.
 ===== Information =====
-  * Version: 0.14.4
+  * Version: 1.1.2
   * Added: October, 2015
-  * Link: https://github.com/sestaton/Pairfq
+  * Link: https://code.google.com/p/ea-utils/
 ===== Usage =====
-See versions of pairfq which are available:
+See versions of ea-utils which are available:
-<code>$ module avail pairfq</code>
+<code>$ module avail ea-utils</code>
-Load and run pairfq:
+Load ea-utils:
-<code>$ module load pairfq/0.14.4
+<code>$ module load ea-utils/1.1.2
-$ pairfq</code>
+</code>
 ===== Installation ======
 Notes from the sysadmin during installation:
-<code>$ wget https://github.com/sestaton/Pairfq/archive/v0.14.4.tar.gz
+<code>
-$ tar -xvf v0.14.4.tar.gz
+$ wget "https://drive.google.com/uc?id=0B7KhouP0YeRAc2xackxzRnFrUEU&export=download" -O ea-utils.1.1.2-806.tar.gz
-$ cd Pairfq-0.14.4
+$ tar -xvf ea-utils.1.1.2-806.tar.gz
-$ sudo mkdir -p /export/apps/pairfq/0.14.4
+$ cd ea-utils.1.1.2-806
-$ sudo chown -R joguya:joguya /export/apps/pairfq/0.14.4
+$ scl enable devtoolset-2 bash
+$ module load samtools/1.2
+$ sudo mkdir -p /export/apps/ea-utils/1.1.2
+$ sudo chown -R joguya:joguya /export/apps/ea-utils/1.1.2
 $ module load perl/5.16.3.1603
-$ perl Makefile.PL PREFIX=/export/apps/pairfq/0.14.4
+$ PREFIX=/export/apps/ea-utils/1.1.2 make install
-$ make
+$ sudo chown -R root:root /export/apps/ea-utils/1.1.2
-$ make test
-$ make install
-$ sudo chown -R root:root /export/apps/pairfq/0.14.4
 </code>