ea-utils-software
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ea-utils-software [2015/10/08 12:48] – created joguya | ea-utils-software [2018/11/18 09:14] (current) – aorth | ||
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- | ====== | + | ====== |
- | Sync paired-end FASTA/Q files and keep singleton reads. | + | Command-line tools for processing biological sequencing data. Barcode demultiplexing, |
===== Information ===== | ===== Information ===== | ||
- | * Version: | + | * Version: |
* Added: October, 2015 | * Added: October, 2015 | ||
- | * Link: https:// | + | |
+ | | ||
===== Usage ===== | ===== Usage ===== | ||
- | See versions of pairfq which are available: | + | See available |
- | < | + | < |
- | Load and run pairfq: | + | Load one version into your environment: |
- | < | + | < |
- | $ ruby</ | + | |
===== Installation ====== | ===== Installation ====== | ||
Notes from the sysadmin during installation: | Notes from the sysadmin during installation: | ||
- | < | + | < |
- | $ tar -xvf v0.14.4.tar.gz | + | $ wget https:// |
- | $ cd Pairfq-0.14.4 | + | $ sudo yum install gsl-devel perl-Test-Base |
- | $ sudo mkdir -p / | + | $ tar xf 1.04.807.tar.gz |
- | $ sudo chown -R joguya: | + | $ cd ea-utils-1.04.807/clipper |
- | $ module load perl/ | + | |
- | $ perl Makefile.PL PREFIX=/ | + | |
$ make | $ make | ||
- | $ make test | + | $ sudo mkdir -p / |
- | $ make install | + | $ sudo chown aorth / |
- | $ sudo chown -R root:root / | + | $ make install |
- | </ | + | $ sudo yum remove gsl-devel perl-Test-Base |
+ | $ sudo chown -R root:root / |
ea-utils-software.txt · Last modified: 2018/11/18 09:14 by aorth