Differences

This shows you the differences between two versions of the page.

--- diy [2009/11/10 06:35] – 172.26.0.166
+++ diy [2010/05/22 14:19] (current) – external edit 127.0.0.1
@@ Line 1: / Line 1: @@
-**DIYA**
+**DIYA:: (currently works on HPC head node only)**
 ----
@@ Line 6: / Line 6: @@
 DIYA is intended to bring a collection of tools and libraries into the hands of small scale genomics labs for the process of sequence assembly and annotation. Projects include DIYA, MGAP, CRISPR, and DIYGV
-http://sourceforge.net/projects/diyg/
 http://gmod.org/wiki/DIYA
-INSTALLATION
+**INSTALLATION**
 ----
 Get the latest versiont from
+http://sourceforge.net/projects/diyg/
 Required Perl modules (available from CPAN)
         * BioPerl (instructions at http://bioperl.org)
-        * Data::Merger
+        * Data::Merger (I had problems installing Data::merger from CPAN console so I downloaded the source "Data utilities" http://search.cpan.org/~cornelis/Data-Utilities-0.04/ and compiled manually)
         * Getopt::Long
         * FileHandle
@@ Line 47: / Line 48: @@
 Quick Install
-. Install all the required Perl modules and any suggested software
+. Install all the required Perl modules and any suggested software and databases
-   and databases
 . Type the following at a command line
+<code>tar -xvf diya-X.X.X.tar
+        cd diya-X.X.X
+        perl Makefile.PL
+        make
+        make test
+        sudo make install
+</code>
+. Set the $DIYAHOME variable to /path/to/diya-X.X or to wherever you would like to see the diya output files.