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--- diamond-software [2022/03/14 15:01] – aorth
+++ diamond-software [2022/03/17 09:10] (current) – aorth
@@ Line 54: / Line 54: @@
 <code>$ wget ftp://ftp.ncbi.nlm.nih.gov/blast/db/FASTA/nr.gz
-$ diamond makedb --in nr.gz -d nr
+$ wget ftp://ftp.ncbi.nlm.nih.gov/pub/taxonomy/accession2taxid/prot.accession2taxid.FULL.gz
+$ wget ftp://ftp.ncbi.nlm.nih.gov/pub/taxonomy/taxdmp.zip
+$ unzip taxdmp.zip
+$ diamond makedb --in nr.gz --db nr --taxonmap prot.accession2taxid.FULL.gz --taxonnodes nodes.dmp --taxonnames names.dmp
 $ sudo mkdir -p /export/data/bio/diamond
 $ sudo cp nr.dmnd /export/data/bio/diamond</code>