diamond-software
Differences
This shows you the differences between two versions of the page.
Both sides previous revisionPrevious revisionNext revision | Previous revisionNext revisionBoth sides next revision | ||
diamond-software [2017/07/23 11:25] – aorth | diamond-software [2018/11/04 16:06] – aorth | ||
---|---|---|---|
Line 5: | Line 5: | ||
===== Information ===== | ===== Information ===== | ||
- | * Latest | + | * Version: 0.9.9 |
* Added: November, 2016 | * Added: November, 2016 | ||
* Updated: July, 2017 | * Updated: July, 2017 | ||
Line 18: | Line 18: | ||
< | < | ||
$ diamond</ | $ diamond</ | ||
+ | |||
+ | An example SLURM submission script might look like: | ||
+ | |||
+ | < | ||
+ | #SBATCH -p batch | ||
+ | #SBATCH -n 4 | ||
+ | #SBATCH -J diamond | ||
+ | |||
+ | # Load diamond module | ||
+ | module load diamond/ | ||
+ | |||
+ | # Set up environment | ||
+ | export DATADIR=/ | ||
+ | export WORKDIR=/ | ||
+ | |||
+ | # Create and change to working directory | ||
+ | mkdir -p $WORKDIR | ||
+ | cd $WORKDIR | ||
+ | |||
+ | diamond blastx -p 4 -q $DATADIR/ | ||
+ | |||
+ | Make sure to match the number of CPUs in your SLURM request ('' | ||
===== Installation ====== | ===== Installation ====== |
diamond-software.txt · Last modified: 2022/03/17 09:10 by aorth