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diamond-software

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diamond-software [2017/07/23 06:52] – aorthdiamond-software [2017/07/23 11:25] – aorth
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 $ tar xf diamond-linux64.tar.gz $ tar xf diamond-linux64.tar.gz
 $ sudo cp diamond diamond_manual.pdf /export/apps/diamond/0.9.9</code> $ sudo cp diamond diamond_manual.pdf /export/apps/diamond/0.9.9</code>
 +
 +Diamond requires specially formatted databases, which you create using the ''diamond makedb'' subcommand. The input must be a FASTA file, but can be gzip compressed, for example the NR database from NCBI:
 +
 +<code>$ wget ftp://ftp.ncbi.nlm.nih.gov/blast/db/FASTA/nr.gz
 +$ diamond makedb --in nr.gz -d nr
 +$ sudo mkdir -p /export/data/bio/diamond
 +$ sudo cp nr.dmnd /export/data/bio/diamond</code>
diamond-software.txt · Last modified: 2022/03/17 09:10 by aorth