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cnvnator-software [2017/05/16 18:40] – created aorthcnvnator-software [2017/05/25 16:13] (current) – aorth
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 ===== Usage ===== ===== Usage =====
  
-See versions of cnvnator which are available:+See versions of CNVnator which are available:
 <code>$ module avail root</code> <code>$ module avail root</code>
  
 Load and run root: Load and run root:
-<code>$ module load cnvnator/0.3.3+<code>$ module load CNVnator/0.3.3
 $ cnvnator</code> $ cnvnator</code>
  
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 $ sudo cp cnvnator /export/apps/CNVnator/0.3.3</code> $ sudo cp cnvnator /export/apps/CNVnator/0.3.3</code>
  
-Note: compiled on CentOS 7 because it needs root, which in turn needs quite a bit of modern dependencies.+Note: compiled on CentOS 7 because it needs root, which in turn needs quite a bit of modern dependencies. Recommend running from compute03. Also, I compiled with max contig size of 30000, see src/HisMaker.cpp.
cnvnator-software.1494960052.txt.gz · Last modified: by aorth