circos-software
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circos-software [2020/04/07 13:28] – aorth | circos-software [2022/11/28 08:10] (current) – aorth | ||
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===== Information ===== | ===== Information ===== | ||
- | * Version: 0.67 | + | * Version: 0.69-9 |
* Added: July, 2014 | * Added: July, 2014 | ||
- | * Updated: | + | * Updated: |
* Link: http:// | * Link: http:// | ||
===== Usage ===== | ===== Usage ===== | ||
- | === See versions | + | See versions which are available: |
< | < | ||
+ | |||
+ | Load one version into your environment and run it: | ||
+ | < | ||
+ | $ circos</ | ||
===== Installation ====== | ===== Installation ====== | ||
Notes from the sysadmin during installation: | Notes from the sysadmin during installation: | ||
- | < | + | < |
- | $ tar zxf circos-0.69-9.tgz | + | $ wget http:// |
- | $ cd circos-0.66-9</ | + | $ tar zxf circos-0.69-9.tgz |
- | + | $ cd circos-0.69-9</ | |
- | ===== Check requirements ===== | + | |
- | Circos needs some Perl modules, check which we satisfy already: | + | |
- | + | ||
- | < | + | |
- | $ ./circos -modules</ | + | |
- | + | ||
- | For missing modules, check and install from the system package manager first: | + | |
- | + | ||
- | < | + | |
- | Install any other missing | + | Circos needs some Perl modules, check which we satisfy already with our system Perl: |
- | * '' | + | < |
- | * '' | + | |
- | * '' | + | |
- | * '' | + | |
- | ===== Install missing perl modules ===== | + | Create |
- | Create | + | |
< | < | ||
$ sudo chown -R aorth / | $ sudo chown -R aorth / | ||
- | $ cpanm -l / | + | $ cpanm -l / |
- | ...</ | + | |
- | ===== Test again ===== | + | Test again: |
- | < | + | < |
- | ===== Continue | + | When all module requirements are satisfied continue the installation: |
- | < | + | < |
$ cp -r * / | $ cp -r * / | ||
- | ===== Try to run ===== | ||
Add install directory to PATH and PERL5LIB and try to run it: | Add install directory to PATH and PERL5LIB and try to run it: | ||
Line 62: | Line 51: | ||
$ circos -modules</ | $ circos -modules</ | ||
- | ===== Fix permissions | + | Fix permissions: |
< | < |
circos-software.txt · Last modified: 2022/11/28 08:10 by aorth