circos-software
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circos-software [2020/04/07 13:28] – aorth | circos-software [2020/09/18 10:14] – aorth | ||
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===== Information ===== | ===== Information ===== | ||
- | * Version: 0.67 | + | * Version: 0.69-9 |
* Added: July, 2014 | * Added: July, 2014 | ||
- | * Updated: | + | * Updated: |
* Link: http:// | * Link: http:// | ||
===== Usage ===== | ===== Usage ===== | ||
- | === See versions of circos which are available | + | See versions of circos which are available: |
< | < | ||
+ | |||
+ | Load one version into your environment and run it: | ||
+ | < | ||
+ | $ circos</ | ||
===== Installation ====== | ===== Installation ====== | ||
Notes from the sysadmin during installation: | Notes from the sysadmin during installation: | ||
- | < | + | < |
- | $ tar zxf circos-0.69-9.tgz | + | $ wget http:// |
- | $ cd circos-0.66-9</ | + | $ tar zxf circos-0.69-9.tgz |
+ | $ cd circos-0.69-9</ | ||
- | ===== Check requirements ===== | + | Circos needs some Perl modules, check which we satisfy already |
- | Circos needs some Perl modules, check which we satisfy already: | + | |
- | < | + | < |
- | $ ./circos -modules</ | + | $ ./bin/circos -modules</ |
- | For missing | + | Create directory for Perl modules and install |
- | < | + | < |
+ | $ sudo mkdir -p / | ||
+ | $ sudo chown -R aorth / | ||
+ | $ cpanm -l / | ||
+ | $ sudo yum install gd-devel | ||
+ | $ cpanm -l / | ||
+ | $ sudo yum remove gd-devel | ||
+ | $ cpanm -l / | ||
+ | $ cpanm -l / | ||
+ | </ | ||
- | Install any other missing modules | + | I don't install all the missing modules |
- | + | ||
- | * '' | + | |
- | * '' | + | |
- | * '' | + | |
- | * '' | + | |
- | + | ||
- | ===== Install missing perl modules ===== | + | |
- | Create directories for perl modules: | + | |
- | + | ||
- | < | + | |
- | $ sudo chown -R aorth / | + | |
- | $ cpanm -l / | + | |
- | ...</ | + | |
- | ===== Test again ===== | + | Test again: |
< | < | ||
- | ===== Continue | + | When all module requirements are satisfied continue the installation: |
< | < | ||
$ cp -r * / | $ cp -r * / | ||
- | ===== Try to run ===== | ||
Add install directory to PATH and PERL5LIB and try to run it: | Add install directory to PATH and PERL5LIB and try to run it: | ||
Line 62: | Line 61: | ||
$ circos -modules</ | $ circos -modules</ | ||
- | ===== Fix permissions | + | Fix permissions: |
< | < |
circos-software.txt · Last modified: 2022/11/28 08:10 by aorth