ILRI Research Computing

User Tools

Site Tools

You are here: start » checkm-software
checkm-software

Differences

This shows you the differences between two versions of the page.

Link to this comparison view

Next revision		Previous revision
Last revisionBoth sides next revision
checkm-software [2020/03/12 14:27] – created aorthcheckm-software [2020/03/12 16:29] – aorth
Line 28: Line 28:
 $ pip install --upgrade pip setuptools $ pip install --upgrade pip setuptools
 $ pip install checkm-genome==1.1.2 $ pip install checkm-genome==1.1.2
 +$ wget https://data.ace.uq.edu.au/public/CheckM_databases/checkm_data_2015_01_16.tar.gz
 +$ mkdir -p /export/apps/checkm/1.1.2/data
 +$ tar xf checkm_data_2015_01_16.tar.gz -C /export/apps/checkm/1.1.2/data
 +$ find /export/apps/checkm/1.1.2/data -type d -exec chmod 755 {} \;
 +$ find /export/apps/checkm/1.1.2/data -type f -exec chmod 644 {} \;
 +$ checkm data setRoot /export/apps/checkm/1.1.2/data
 $ sudo chown -R root:root /export/apps/checkm/1.1.2</code> $ sudo chown -R root:root /export/apps/checkm/1.1.2</code>
checkm-software.txt · Last modified: 2020/03/12 16:45 by aorth