changeo-software
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changeo-software [2017/05/31 08:29] – aorth | changeo-software [2022/04/25 15:14] (current) – aorth | ||
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===== Information ===== | ===== Information ===== | ||
- | * Version: | + | * Version: |
* Added: September, 2016 | * Added: September, 2016 | ||
- | * Updated: | + | * Updated: |
- | * Link: http:// | + | * Link: https:// |
===== Usage ===== | ===== Usage ===== | ||
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Load changeo into your environment: | Load changeo into your environment: | ||
- | < | + | < |
===== Installation ====== | ===== Installation ====== | ||
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Notes from the sysadmin during installation: | Notes from the sysadmin during installation: | ||
- | < | + | < |
- | $ module load python/3.4.3 | + | $ module load python/3.9 |
- | $ sudo mkdir / | + | $ sudo mkdir / |
- | $ sudo chown aorth / | + | $ sudo chown aorth / |
- | $ python -m venv / | + | $ python -m venv / |
- | $ . / | + | $ source |
- | $ pip install -U pip setuptools | + | $ pip install --upgrade |
- | $ pip install -U numpy scipy pandas biopython | + | $ pip install changeo==1.2.0 |
- | $ pip install | + | $ sudo chown -R root:root / |
- | $ sudo chown -R root:root / | + | |
- | + | ||
- | Change-O requires presto, so either install it and all of its dependencies here as well, or just make sure the Change-O module also loads presto. | + |
changeo-software.1496219385.txt.gz · Last modified: 2017/05/31 08:29 by aorth