chado
Differences
This shows you the differences between two versions of the page.
Both sides previous revisionPrevious revisionNext revision | Previous revisionLast revisionBoth sides next revision | ||
chado [2010/01/14 08:09] – 172.26.15.184 | chado [2010/01/14 09:37] – 172.26.15.184 | ||
---|---|---|---|
Line 4: | Line 4: | ||
Convert file to gff using script: | Convert file to gff using script: | ||
- | < | + | < |
- | '' | + | |
- | < | + | |
- | Create pgsql database and load data: | + | |
+ | Create pgsql database. | ||
- | '' | ||
+ | < | ||
+ | psql tparvadb | ||
+ | chado> SELECT * FROM organism; | ||
+ | chado> INSERT INTO organism ( abbreviation, | ||
- | '' | + | chado> \q</ |
- | '' | + | Load gff3 data into database |
- | + | <code> | |
- | '' | + | |
- | + | ||
- | '' | + | |
- | + | ||
- | + | ||
- | '' | + | |
+ | Install Gbrowse2 | ||
+ | < | ||
+ | Directory for GBrowse' | ||
+ | Directory for GBrowse' | ||
+ | Directory for GBrowse' | ||
+ | Directory for GBrowse' | ||
+ | Directory for GBrowse' | ||
+ | Internet port to run demo web site on (for demo)? [8000] | ||
+ | Apache loadable module directory (for demo)? [/ | ||
+ | User account under which Apache daemon runs? [www-data] | ||
+ | Automatically update Apache config files to run GBrowse? [y] | ||
+ | Automatically update system config files to run gbrowse-slave? | ||
+ | </ |
chado.txt · Last modified: 2010/05/22 14:19 by 127.0.0.1