Differences

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--- chado [2010/01/13 09:09] – 172.26.15.184
+++ chado [2010/01/14 08:09] – 172.26.15.184
@@ Line 1: / Line 1: @@
 ====== Chado ======
+Create new T.pava Chr1 Chado database from Chr1 Genbank file. Local version of Genbank file does not work. Downloaded new file from Genbank: NC_001142.gbk
+Convert file to gff using script:
+<code>
+''genbank2gff3.pl''
+<code>
+Create pgsql database and load data:
 ''createdb --template=chado tparvadb''
-''psql chado''
+''psql tparvadb''
  ''chado> SELECT * FROM organism;''
@@ Line 11: / Line 20: @@
  ''chado> \q''
+''gmod_bulk_load_gff3.pl  --dbname tparvadb --dbxref GeneID --organism T.parva --gff T.parva_chr1.gb.gff''