ILRI Research Computing

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====== CEGMA ======
CEGMA (Core Eukaryotic Genes Mapping Approach) is a software package for building a highly reliable set of gene annotations in the absence of experimental data.

===== Information =====

  * Version: v2.5
  * Added: November, 2014
  * Link: http://korflab.ucdavis.edu/Datasets/cegma/

===== Usage =====

=== See versions of cegma which are available ===
<code>$ module avail cegma</code>

=== Test with sample data ===
<code>$ module load cegma/v2.5
$ cegma -g $CEGMA/sample/sample.dna -p $CEGMA/sample/sample.prot</code>

===== Installation ======
Notes from the sysadmin during installation:

<code>$ cd /tmp
$ git clone https://github.com/KorfLab/CEGMA_v2.git
$ cd CEGMA_v2
$ git checkout v2.5
$ make
$ sudo mkdir -p /export/apps/cegma/v2.5
$ sudo cp -rv * /export/apps/cegma/v2.5</code>