cd-hit-software
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cd-hit-software [2016/08/30 07:13] – created joguya | cd-hit-software [2021/03/17 13:19] (current) – aorth | ||
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====== CD-HIT ====== | ====== CD-HIT ====== | ||
- | |||
A program for clustering and comparing protein or nucleotide sequences. | A program for clustering and comparing protein or nucleotide sequences. | ||
===== Information ===== | ===== Information ===== | ||
- | * Version: 4.6.6 | + | * Version: 4.8.1 |
* Added: August, 2016 | * Added: August, 2016 | ||
- | * Link: http://weizhongli-lab.org/cd-hit/ | + | |
+ | | ||
===== Usage ===== | ===== Usage ===== | ||
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< | < | ||
- | Load cd-hit | + | Load one version into your environment and run it: |
- | < | + | < |
+ | $ cd-hit</ | ||
===== Installation ====== | ===== Installation ====== | ||
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Notes from the sysadmin during installation: | Notes from the sysadmin during installation: | ||
- | < | + | < |
- | $ cd /tmp | + | $ wget https:// |
- | $ wget -qO - https:// | + | $ tar xf cd-hit-v4.8.1-2019-0228.tar.gz |
- | $ cd cdhit-4.6.6/ | + | $ cd cd-hit-v4.8.1-2019-0228 |
- | $ scl enable devtoolset-2 bash | + | |
- | $ module load openmpi/1.8.2 | + | |
- | $ sudo mkdir -p / | + | |
- | $ sudo chown joguya: | + | |
$ make | $ make | ||
- | $ sed -i 's|#!/usr/bin/perl|#!/usr/bin/env perl|g' | + | $ sudo mkdir -p /export/apps/cd-hit/4.8.1 |
- | $ find . -type f -perm /o+x -exec cp -v {} / | + | $ sudo chown aorth / |
- | $ cd cd-hit-auxtools | + | $ PREFIX=/ |
- | $ make | + | $ sudo chown -R root:root / |
- | $ sed -i ' | + | |
- | $ find . -type f -perm /o+x -exec cp -v {} / | + | |
- | $ sudo chown -R root:root / | + |
cd-hit-software.txt · Last modified: 2021/03/17 13:19 by aorth