canu-software
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canu-software [2017/09/25 14:09] – created aorth | canu-software [2019/02/14 09:52] (current) – [Usage] aorth | ||
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====== Canu ====== | ====== Canu ====== | ||
+ | Canu is a fork of the Celera Assembler designed for high-noise single-molecule sequencing (such as the PacBio RSII or Oxford Nanopore MinION). | ||
===== Information ===== | ===== Information ===== | ||
- | * Version: 1.6 | + | * Version: 1.8 |
* Added: September, 2017 | * Added: September, 2017 | ||
+ | * Updated: October, 2018 | ||
* Link: http:// | * Link: http:// | ||
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< | < | ||
- | Load canu into your environment and run it: | + | Load one version |
- | < | + | < |
$ canu</ | $ canu</ | ||
+ | |||
+ | Note: By default canu will try to use all the CPUs available on the machine so you should limit it to the number of CPUs requested in your SLURM jobs with the '' | ||
===== Installation ====== | ===== Installation ====== | ||
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< | < | ||
- | $ wget https:// | + | $ wget https:// |
- | $ tar xf canu-1.6.Linux-amd64.tar.xz | + | $ tar xf canu-1.8.Linux-amd64.tar.xz |
- | $ sudo mkdir -p / | + | $ sudo mkdir -p / |
- | $ sudo cp -r canu-1.6/Linux-amd64/ | + | $ sudo cp -r canu-1.8/* / |
canu-software.1506348559.txt.gz · Last modified: 2017/09/25 14:09 by aorth