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bwa-software [2017/05/03 09:49] aorthbwa-software [2020/06/17 07:04] (current) aorth
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 ===== Information ===== ===== Information =====
  
-  * Latest version: 0.7.15+  * Latest version: 0.7.17
   * Added: April, 2013   * Added: April, 2013
-  * Updated: February2017 +  * Updated: June2020 
-  * Link: http://bio-bwa.sourceforge.net+  * Link: https://github.com/lh3/bwa
  
 ===== Usage ===== ===== Usage =====
  
-=== See versions of bwa which are available === +See versions of bwa which are available
-<code>module avail bwa</code>+ 
 +<code>module avail bwa</code> 
 + 
 +Load one version into your environment and run it: 
 + 
 +<code>$ module load bwa/0.7.17</code>
  
 ===== Installation ====== ===== Installation ======
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 <code> <code>
 $ cd /tmp $ cd /tmp
-$ wget -qO- "https://downloads.sourceforge.net/project/bio-bwa/bwa-0.7.15.tar.bz2?r=https%3A%2F%2Fsourceforge.net%2Fprojects%2Fbio-bwa%2Ffiles%2F&ts=1486290428&use_mirror=netix" | tar xjv +$ wget https://github.com/lh3/bwa/releases/download/v0.7.17/bwa-0.7.17.tar.bz2 
-cd bwa-0.7.15/ +tar xf bwa-0.7.17.tar.bz2  
-scl enable devtoolset-2 bash+cd bwa-0.7.17
 $ make $ make
-$ sudo mkdir -p /export/apps/bwa/0.7.15/{bin,share/man/man1} +$ sudo mkdir -p /export/apps/bwa/0.7.17/{bin,share/man/man1} 
-$ sudo cp bwa *.pl /export/apps/bwa/0.7.15/bin +$ sudo cp bwa *.pl /export/apps/bwa/0.7.17/bin 
-$ sudo cp -rv bwakit/ /export/apps/bwa/0.7.15/+$ sudo cp -rv bwakit/ /export/apps/bwa/0.7.17
 </code> </code>
bwa-software.1493804943.txt.gz · Last modified: 2017/05/03 09:49 by aorth