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bwa-software [2016/03/24 14:13] joguyabwa-software [2020/06/17 07:04] (current) aorth
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 ===== Information ===== ===== Information =====
  
-  * Latest version: 0.7.13+  * Latest version: 0.7.17
   * Added: April, 2013   * Added: April, 2013
-  * Updated: March2016 +  * Updated: June2020 
-  * Link: http://bio-bwa.sourceforge.net+  * Link: https://github.com/lh3/bwa
  
 ===== Usage ===== ===== Usage =====
  
-=== See versions of bwa which are available === +See versions of bwa which are available
-<code>module avail bwa</code>+ 
 +<code>module avail bwa</code> 
 + 
 +Load one version into your environment and run it: 
 + 
 +<code>$ module load bwa/0.7.17</code>
  
 ===== Installation ====== ===== Installation ======
 Notes from the sysadmin during installation: Notes from the sysadmin during installation:
  
-<code>$ cd /tmp +<code> 
-$ wget 'http://downloads.sourceforge.net/project/bio-bwa/bwa-0.7.12.tar.bz2?r=http%3A%2F%2Fsourceforge.net%2Fprojects%2Fbio-bwa%2Ffiles%2F&ts=1426229921&use_mirror=liquidtelecom' -O bwa-0.7.12.tar.bz2 +$ cd /tmp 
-$ tar xf bwa-0.7.12.tar.bz2  +$ wget https://github.com/lh3/bwa/releases/download/v0.7.17/bwa-0.7.17.tar.bz2 
-$ cd bwa-0.7.12 +$ tar xf bwa-0.7.17.tar.bz2  
-$ sed -i 's/gcc$/clang/' Makefile+$ cd bwa-0.7.17
 $ make $ make
-$ sudo mkdir -p /export/apps/bwa/0.7.12/{bin,share/man/man1} +$ sudo mkdir -p /export/apps/bwa/0.7.17/{bin,share/man/man1} 
-$ sudo cp bwa *.pl /export/apps/bwa/0.7.12/bin +$ sudo cp bwa *.pl /export/apps/bwa/0.7.17/bin 
-$ sudo cp bwa.1 /export/apps/bwa/0.7.12/share/man/man1</code>+$ sudo cp -rv bwakit/ /export/apps/bwa/0.7.17 
 +</code>
bwa-software.1458828810.txt.gz · Last modified: 2016/03/24 14:13 by joguya