busco-software
Differences
This shows you the differences between two versions of the page.
Both sides previous revisionPrevious revisionNext revision | Previous revision | ||
busco-software [2021/12/28 11:33] – aorth | busco-software [2023/03/21 12:37] (current) – aorth | ||
---|---|---|---|
Line 4: | Line 4: | ||
===== Information ===== | ===== Information ===== | ||
- | * Latest Version: | + | * Latest Version: |
* Added: August, 2015 | * Added: August, 2015 | ||
- | * Updated: | + | * Updated: |
* Link: https:// | * Link: https:// | ||
Line 15: | Line 15: | ||
Load one version into your environment and run it: | Load one version into your environment and run it: | ||
- | < | + | < |
After loading the module, consult the built-in help: | After loading the module, consult the built-in help: | ||
Line 32: | Line 32: | ||
< | < | ||
- | $ git clone https:// | + | $ wget https:// |
- | $ cd busco | + | $ tar xf busco-5.2.2.tar.gz |
- | $ git checkout 4.0.6 | + | $ cd busco-5.2.2 |
- | $ sudo mkdir / | + | $ sudo mkdir / |
- | $ sudo chown aorth / | + | $ sudo chown aorth / |
- | $ python3 -m venv / | + | $ python3 -m venv / |
- | $ source / | + | $ source / |
$ pip install --upgrade setuptools pip | $ pip install --upgrade setuptools pip | ||
+ | $ pip install pandas biopython | ||
$ python setup.py install | $ python setup.py install | ||
- | $ module load R/3.6 | + | $ sudo cp scripts/ |
- | $ mkdir / | + | $ module load R/4.0 |
- | $ export | + | $ mkdir / |
- | $ Rscript -e ' | + | $ R_LIBS=/ |
- | $ module load blast/ | + | $ sudo chown -R root:root / |
- | $ ./ | + | |
- | $ sudo cp config/ | + | |
- | $ sudo chown -R root:root / | + | |
- | + | ||
- | Consult the [[https:// | + |
busco-software.1640691195.txt.gz · Last modified: 2021/12/28 11:33 by aorth