busco-software
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| Both sides previous revisionPrevious revisionNext revision | Previous revision | ||
| busco-software [2017/09/11 13:06] – aorth | busco-software [2023/03/21 12:37] (current) – aorth | ||
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| ===== Information ===== | ===== Information ===== | ||
| - | * Latest Version: | + | * Latest Version: |
| * Added: August, 2015 | * Added: August, 2015 | ||
| - | * Updated: | + | * Updated: |
| - | * Link: http:// | + | * Link: https:// |
| ===== Usage ===== | ===== Usage ===== | ||
| Line 14: | Line 14: | ||
| < | < | ||
| - | Load one version into your environment: | + | Load one version into your environment |
| - | < | + | < |
| After loading the module, consult the built-in help: | After loading the module, consult the built-in help: | ||
| - | < | + | < |
| + | |||
| + | See the BUSCO documentation for more information about how to use it: https:// | ||
| Note: BUSCO utilizes Augustus and requires you to make a copy of the Augustus configuration for each of your runs as well as set up an environment variable pointing to it, ie: | Note: BUSCO utilizes Augustus and requires you to make a copy of the Augustus configuration for each of your runs as well as set up an environment variable pointing to it, ie: | ||
| Line 30: | Line 32: | ||
| < | < | ||
| - | $ git clone https:// | + | $ wget https:// |
| - | $ cd busco | + | $ tar xf busco-5.2.2.tar.gz |
| - | $ git checkout 3.0.2 | + | $ cd busco-5.2.2 |
| - | $ module load python/3.6.1 | + | $ sudo mkdir / |
| - | $ sudo mkdir / | + | $ sudo chown aorth / |
| - | $ sudo chown aorth / | + | $ python3 |
| - | $ python | + | $ source |
| - | $ . / | + | $ pip install --upgrade setuptools pip |
| + | $ pip install pandas biopython | ||
| $ python setup.py install | $ python setup.py install | ||
| - | $ cp -rv * / | + | $ sudo cp scripts/ |
| - | $ cp /export/ | + | $ module load R/4.0 |
| - | # edit paths in / | + | $ mkdir / |
| - | $ sudo chown -R root:root / | + | $ R_LIBS=/ |
| + | $ sudo chown -R root:root / | ||
busco-software.1505135199.txt.gz · Last modified: 2017/09/11 13:06 by aorth