busco-software
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busco-software [2017/09/11 13:07] – aorth | busco-software [2021/12/28 11:33] – aorth | ||
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===== Information ===== | ===== Information ===== | ||
- | * Latest Version: | + | * Latest Version: |
* Added: August, 2015 | * Added: August, 2015 | ||
- | * Updated: | + | * Updated: |
- | * Link: http:// | + | * Link: https:// |
===== Usage ===== | ===== Usage ===== | ||
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< | < | ||
- | Load one version into your environment: | + | Load one version into your environment |
- | < | + | < |
After loading the module, consult the built-in help: | After loading the module, consult the built-in help: | ||
- | < | + | < |
+ | |||
+ | See the BUSCO documentation for more information about how to use it: https:// | ||
Note: BUSCO utilizes Augustus and requires you to make a copy of the Augustus configuration for each of your runs as well as set up an environment variable pointing to it, ie: | Note: BUSCO utilizes Augustus and requires you to make a copy of the Augustus configuration for each of your runs as well as set up an environment variable pointing to it, ie: | ||
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$ git clone https:// | $ git clone https:// | ||
$ cd busco | $ cd busco | ||
- | $ git checkout | + | $ git checkout |
- | $ module load python/3.6.1 | + | $ sudo mkdir / |
- | $ sudo mkdir / | + | $ sudo chown aorth / |
- | $ sudo chown aorth / | + | $ python3 |
- | $ python | + | $ source |
- | $ . / | + | $ pip install --upgrade setuptools pip |
$ python setup.py install | $ python setup.py install | ||
- | $ cp -rv * / | + | $ module load R/3.6 |
- | $ cp / | + | $ mkdir / |
- | # edit paths in / | + | $ export R_LIBS=/ |
- | $ sudo chown -R root:root / | + | $ Rscript -e ' |
+ | $ module load blast/2.2.31+ augustus/3.2.3 hmmer/3.2.1 sepp/4.3.8 prodigal/2.6.3 | ||
+ | $ ./scripts/ | ||
+ | $ sudo cp config/ | ||
+ | $ sudo chown -R root:root / | ||
- | Consult the file '' | + | Consult the [[https:// |
busco-software.txt · Last modified: 2023/03/21 12:37 by aorth