Differences

This shows you the differences between two versions of the page.

--- bowtie2-software [2022/11/21 08:15] – aorth
+++ bowtie2-software [2022/11/21 08:16] (current) – aorth
@@ Line 1: / Line 1: @@
 ====== Bowtie 2======
-  * Bowtie is an ultrafast, memory-efficient short read aligner. It aligns short DNA sequences (reads) to the human genome at a rate of over 25 million 35-bp reads per hour. Bowtie indexes the genome with a Burrows-Wheeler index to keep its memory footprint small: typically about 2.2 GB for the human genome (2.9 GB for paired-end).
-  * For reads longer than about 50 bp Bowtie 2 is generally faster, more sensitive, and uses less memory than Bowtie 1. For relatively short reads (e.g. less than 50 bp) Bowtie 1 is sometimes faster and/or more sensitive.
+Bowtie is an ultrafast, memory-efficient short read aligner. It aligns short DNA sequences (reads) to the human genome at a rate of over 25 million 35-bp reads per hour. Bowtie indexes the genome with a Burrows-Wheeler index to keep its memory footprint small: typically about 2.2 GB for the human genome (2.9 GB for paired-end).
-  * There is no upper limit on read length in Bowtie 2. Bowtie 1 had an upper limit of around 1000 bp.
-  * [[http://bowtie-bio.sourceforge.net/bowtie2/manual.shtml#how-is-bowtie-2-different-from-bowtie-1| differences between Bowtie1 & Bowtie2]]
+For reads longer than about 50 bp Bowtie 2 is generally faster, more sensitive, and uses less memory than Bowtie 1. For relatively short reads (e.g. less than 50 bp) Bowtie 1 is sometimes faster and/or more sensitive.
+There is no upper limit on read length in Bowtie 2. Bowtie 1 had an upper limit of around 1000 bp.
+[[https://bowtie-bio.sourceforge.net/bowtie2/manual.shtml#how-is-bowtie-2-different-from-bowtie-1| Differences between Bowtie1 and Bowtie2]].