Differences

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--- bowtie2-software [2015/03/24 07:39] – created joguya
+++ bowtie2-software [2017/12/25 21:35] – aorth
@@ Line 8: / Line 8: @@
 ===== Information =====
-  * Version: 2.2.3
+  * Version: 2.3.3
-  * Added: October, 2014
+  * Added: March, 2015
+  * Updated: September, 2017
   * Link: http://bowtie-bio.sourceforge.net/bowtie2/index.shtml
 ===== Usage =====
-=== See versions of bowtie2 which are available ===
+See versions of bowtie2 which are available:
 <code>$ module avail bowtie2</code>
-=== Load and run bowtie2 ===
+Load and run bowtie2:
-<code>$ module load bowtie2/2.2.3
+<code>$ module load bowtie2/2.3.3
 $ bowtie2</code>
 ===== Installation ======
 Notes from the sysadmin during installation:
-<code>wget "http://downloads.sourceforge.net/project/bowtie-bio/bowtie2/2.2.3/bowtie2-2.2.3-linux-x86_64.zip?r=http%3A%2F%2Fsourceforge.net%2Fprojects%2Fbowtie-bio%2Ffiles%2Fbowtie2%2F2.2.3%2F&ts=1413528357&use_mirror=tenet" -O bowtie2-2.2.3-linux-x86_64.zip
+<code>$ cd /tmp
-unzip bowtie2-2.2.3-linux-x86_64.zip
+$ wget 'https://downloads.sourceforge.net/project/bowtie-bio/bowtie2/2.3.3/bowtie2-2.3.3-linux-x86_64.zip?r=https%3A%2F%2Fsourceforge.net%2Fprojects%2Fbowtie-bio%2Ffiles%2Fbowtie2%2F2.3.3&ts=1505896186&use_mirror=netix' -O bowtie2-2.3.3-linux-x86_64.zip
-sudo mkdir /export/apps/bowtie2/2.2.3/
+$ unzip bowtie2-2.3.3-linux-x86_64.zip
-sudo cp -rv bowtie2-2.2.3/* /export/apps/bowtie2/2.2.3/</code>
+$ sudo mkdir /export/apps/bowtie2/2.3.3
+sudo cp -rv bowtie2-2.3.3/* /export/apps/bowtie2/2.3.3</code>