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bowtie-software [2014/10/30 16:56] joguyabowtie-software [2014/10/30 16:59] joguya
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   * Bowtie2 indexes the genome with an FM Index to keep its memory footprint small: for the human genome, its memory footprint is typically around 3.2 GB.    * Bowtie2 indexes the genome with an FM Index to keep its memory footprint small: for the human genome, its memory footprint is typically around 3.2 GB. 
   * Bowtie2 supports gapped, local, and paired-end alignment modes.   * Bowtie2 supports gapped, local, and paired-end alignment modes.
 +==== v 2.2.2 ====
 +  * Version 2.2.2
 +  * Link: http://bowtie-bio.sourceforge.net/bowtie2/index.shtml
 +
 +
 +=== Usage ===
 +  * show all versions of bowtie2<code>$ module avail bowtie2
 +
 +---------------------------------------------------------------------------------------------- /etc/modulefiles/ilri ----------------------------------------------------------------------------------------------
 +bowtie2/2.1.0 bowtie2/2.2.2 bowtie2/2.2.2
 +</code>
 +  * load specific version, e.g. v2.2.2:<code>$ module load bowtie2/2.2.2</code>
 +  * get help:<code>$ bowtie2 --help</code>
  
 ==== v 2.2.3 ==== ==== v 2.2.3 ====
-  * Version 1.1.1+  * Version 2.2.3
   * Added: October, 2014   * Added: October, 2014
   * Link: http://bowtie-bio.sourceforge.net/bowtie2/index.shtml   * Link: http://bowtie-bio.sourceforge.net/bowtie2/index.shtml
bowtie-software.txt · Last modified: 2020/04/27 11:13 by aorth