bowtie-software
Differences
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| Both sides previous revisionPrevious revisionNext revision | Previous revisionNext revisionBoth sides next revision | ||
| bowtie-software [2014/10/17 08:03] – joguya | bowtie-software [2014/10/30 17:01] – [v 2.2.2] joguya | ||
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| ===== Bowtie 1 ===== | ===== Bowtie 1 ===== | ||
| + | ==== v1.0.1 ==== | ||
| + | * Version: 1.0.1 | ||
| + | * Link: http:// | ||
| + | |||
| + | === Usage === | ||
| + | * show all versions of bowtie< | ||
| + | |||
| + | ---------------------------------------------------------------------------------------------- / | ||
| + | bowtie/ | ||
| + | </ | ||
| + | * load a specific version, e.g. v1.1.1: < | ||
| + | * get quick help:< | ||
| + | |||
| ==== v1.1.1 ==== | ==== v1.1.1 ==== | ||
| + | * Version: 1.1.1 | ||
| + | * Added: October, 2014 | ||
| + | * Link: http:// | ||
| + | * Changelog: | ||
| + | * Fixed a compiling linkage problem related with Mavericks OSX. | ||
| + | * Improved performance for cases where the reference contains ambiguous or masked nucleobases represented by Ns. | ||
| + | * Some minor automatic tests updates. | ||
| === Usage === | === Usage === | ||
| * show all versions of bowtie< | * show all versions of bowtie< | ||
| Line 56: | Line 76: | ||
| * Bowtie2 indexes the genome with an FM Index to keep its memory footprint small: for the human genome, its memory footprint is typically around 3.2 GB. | * Bowtie2 indexes the genome with an FM Index to keep its memory footprint small: for the human genome, its memory footprint is typically around 3.2 GB. | ||
| * Bowtie2 supports gapped, local, and paired-end alignment modes. | * Bowtie2 supports gapped, local, and paired-end alignment modes. | ||
| + | ==== v 2.2.2 ==== | ||
| + | * Version 2.2.2 | ||
| + | * Link: http:// | ||
| + | |||
| + | |||
| + | === Usage === | ||
| + | * show all versions of bowtie2< | ||
| + | |||
| + | ---------------------------------------------------------------------------------------------- / | ||
| + | bowtie2/ | ||
| + | </ | ||
| + | * load specific version, e.g. v2.2.2:< | ||
| + | * get help:< | ||
| ==== v 2.2.3 ==== | ==== v 2.2.3 ==== | ||
| + | * Version 2.2.3 | ||
| + | * Added: October, 2014 | ||
| + | * Link: http:// | ||
| + | * Changelog: | ||
| + | * Fixed a bug that made loading an index into memory crash sometimes. | ||
| + | * Fixed a silent failure to warn the user in case the -x option is missing. | ||
| + | * Updated al, un, al-conc and un-conc options to avoid confusion in cases where the user does not provide a base file name. | ||
| + | * Fixed a spurious assert that made bowtie2-inspect debug fail. | ||
| + | |||
| === Usage === | === Usage === | ||
| * show all versions of bowtie2< | * show all versions of bowtie2< | ||
| Line 98: | Line 140: | ||
| prepend-path | prepend-path | ||
| * as always, push to github & let ansible take care of teh rest!< | * as always, push to github & let ansible take care of teh rest!< | ||
| - | |||
bowtie-software.txt · Last modified: 2020/04/27 11:13 by aorth