bowtie-software
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bowtie-software [2014/10/17 07:51] – joguya | bowtie-software [2014/10/17 08:02] – joguya | ||
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===== Bowtie 2 ===== | ===== Bowtie 2 ===== | ||
+ | * Bowtie2 is an ultrafast and memory-efficient tool for aligning sequencing reads to long reference sequences. | ||
+ | * It is particularly good at aligning reads of about 50 up to 100s or 1,000s of characters, and particularly good at aligning to relatively long (e.g. mammalian) genomes. | ||
+ | * Bowtie2 indexes the genome with an FM Index to keep its memory footprint small: for the human genome, its memory footprint is typically around 3.2 GB. | ||
+ | * Bowtie2 supports gapped, local, and paired-end alignment modes. | ||
+ | |||
==== v 2.2.3 ==== | ==== v 2.2.3 ==== | ||
=== Usage === | === Usage === | ||
+ | * show all versions of bowtie2< | ||
+ | ---------------------------------------------------------------------------------------------- / | ||
+ | bowtie2/ | ||
+ | </ | ||
+ | * load specific version, e.g. v2.2.3:< | ||
+ | * get help:< |
bowtie-software.txt · Last modified: 2020/04/27 11:13 by aorth