ILRI Research Computing

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====== blast ======
BLAST (Basic Local Alignment Search Tool) is an algorithm for comparing primary biological sequence information, such as the amino-acid sequences of different proteins or the nucleotides of DNA sequences. A BLAST search enables a researcher to compare a query sequence with a library or database of sequences, and identify library sequences that resemble the query sequence above a certain threshold.

===== Information =====

  * Version: 2.14.1+
  * Added: February, 2015
  * Updated: October, 2023
  * Link: https://blast.ncbi.nlm.nih.gov/Blast.cgi

===== Usage =====

See versions which are available:
<code>$ module avail blast</code>

Load one version into your environment and run it:

<code>$ module load blast/2.14.1+
$ blastn -h</code>

===== Installation ======
Notes from the sysadmin during installation:

<code>$ cd /tmp
$ wget https://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/2.14.1/ncbi-blast-2.14.1+-x64-linux.tar.gz
$ tar xf ncbi-blast-2.14.1+-x64-linux.tar.gz
$ sudo cp -r ncbi-blast-2.14.1+ /export/apps/blast/2.14.1+</code>