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blasr-software [2017/09/28 13:14] – created aorthblasr-software [2017/09/28 15:10] (current) – aorth
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 $ git checkout smrtanalysis-4.0.0 $ git checkout smrtanalysis-4.0.0
 $ git submodule update --init $ git submodule update --init
-$ mkdir build && cd build 
 $ scl enable devtoolset-4 bash $ scl enable devtoolset-4 bash
 $ ./configure.py CXXFLAGS=-O3 --shared --sub --no-pbbam HDF5_INCLUDE=/export/apps/hdf5/1.8.19/include HDF5_LIB=/export/apps/hdf5/1.8.19/lib $ ./configure.py CXXFLAGS=-O3 --shared --sub --no-pbbam HDF5_INCLUDE=/export/apps/hdf5/1.8.19/include HDF5_LIB=/export/apps/hdf5/1.8.19/lib
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 $ cp -r blasr libcpp utils /export/apps/blasr/smrtanalysis-4.0.0</code> $ cp -r blasr libcpp utils /export/apps/blasr/smrtanalysis-4.0.0</code>
  
-Note: I installed the smartanalysis-4.0.0 branch because the master branch has switched to a cmake-based build system and is still not working properly (perhaps just on old CentOS with lots of manually compiled external dependencies).+Note: I installed the smartanalysis-4.0.0 tag because the master branch has switched to a cmake-based build system and is still not working properly (perhaps just on old CentOS with lots of manually compiled external dependencies).
blasr-software.txt · Last modified: 2017/09/28 15:10 by aorth