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biological-databases [2021/12/29 16:14] aorthbiological-databases [2023/10/05 05:42] aorth
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 Some of the most common biological sequence databases are available on the HPC for you to use with tools like BLAST. Below you can find the list of them, their location on the system, and the last time they were updated. Some of the most common biological sequence databases are available on the HPC for you to use with tools like BLAST. Below you can find the list of them, their location on the system, and the last time they were updated.
  
-We endeavor to keep this list updated as the One True List™. 
  
 ^Name        ^Comments   ^Updated¹              ^Database Location          ^ ^Name        ^Comments   ^Updated¹              ^Database Location          ^
-| nt | NCBI nucleotide collection (v5²) | Mar 242020 | ''/export/data/bio/ncbi/blast/db/v5'' |+| nt | NCBI nucleotide collection (v5²) | Dec 212021 | ''/export/data/bio/ncbi/blast/db/v5'' |
 | nr | NCBI protein collection (v5²) | Dec 24, 2021 | ''/export/data/bio/ncbi/blast/db/v5'' | | nr | NCBI protein collection (v5²) | Dec 24, 2021 | ''/export/data/bio/ncbi/blast/db/v5'' |
 | UniProt's UniProtKB/Swiss-Prot | Manually curated, most reliable | July 1, 2019 | ''/export/data/bio/uniprot/blast/db'' | | UniProt's UniProtKB/Swiss-Prot | Manually curated, most reliable | July 1, 2019 | ''/export/data/bio/uniprot/blast/db'' |
biological-databases.txt · Last modified: 2023/10/09 11:18 by aorth