Differences

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--- biological-databases [2019/03/13 20:12] – aorth
+++ biological-databases [2019/03/13 20:15] – aorth
@@ Line 5: / Line 5: @@
 We endeavor to keep this list updated as the One True List™.
-^Name        ^Version Number   ^Last Updated¹              ^Database Location          ^How to Use   ^
+^Name        ^Comments   ^Last Updated¹              ^Database Location          ^
-| NCBI nr/nt nucleotide collection | N/A | 2018-11-24 | ''/export/data/bio/ncbi/blast/db'' | Use ''BLASTDB=/export/data/bio/ncbi/blast/db'' and ''blastn ... -db nt'' in your Bash script |
+| NCBI nr/nt nucleotide collection | | 2018-11-24 | ''/export/data/bio/ncbi/blast/db'' |
-| NCBI nr/nt protein collection | N/A | 2018-08-16 | ''/export/data/bio/ncbi/blast/db'' | use ''BLASTDB=/export/data/bio/ncbi/blast/db'' and ''blastp ... -db nr'' in your Bash script |
+| NCBI nr/nt protein collection | | 2018-08-16 | ''/export/data/bio/ncbi/blast/db'' |
-| UniProt's UniProtKB/Swiss-Prot (manually curated, most reliable) | N/A | ? | ''/export/data/bio/uniprot/blast/db'' | use ''BLASTDB=/export/data/bio/uniprot/blast/db'' in your Bash script |
+| UniProt's UniProtKB/Swiss-Prot | Manually curated, most reliable | ? | ''/export/data/bio/uniprot/blast/db'' |
-| UniProt's UniProtKB/TrEMBL (automated curation) | N/A | ? | ''/export/data/bio/uniprot/blast/db'' | use ''BLASTDB=/export/data/bio/uniprot/blast/db'' in your Bash script |
+| UniProt's UniProtKB/TrEMBL | Automated curation | ? | ''/export/data/bio/uniprot/blast/db'' |
-| UniProt's UniRef100 | N/A | ? | ''/export/data/bio/uniprot/blast/db'' | use ''BLASTDB=/export/data/bio/uniprot/blast/db'' in your Bash script |
+| UniProt's UniRef100 | | ? | ''/export/data/bio/uniprot/blast/db'' |
 ==== Using These Databases ====