ILRI Research Computing

User Tools

Site Tools

You are here: start » biological-databases
biological-databases

Differences

This shows you the differences between two versions of the page.

Link to this comparison view

Both sides previous revisionPrevious revision
Next revisionBoth sides next revision
biological-databases [2019/03/13 20:11] – aorthbiological-databases [2019/03/13 20:12] – aorth
Line 12: Line 12:
 | UniProt's UniRef100 | N/A | ? | ''/export/data/bio/uniprot/blast/db'' | use ''BLASTDB=/export/data/bio/uniprot/blast/db'' in your Bash script | | UniProt's UniRef100 | N/A | ? | ''/export/data/bio/uniprot/blast/db'' | use ''BLASTDB=/export/data/bio/uniprot/blast/db'' in your Bash script |
  
 +==== Using These Databases ====
 To use these databases you generally need to set an environment variable pointing to the location of the database before running your program. For example, to use ''nt'' with ''blastn'': To use these databases you generally need to set an environment variable pointing to the location of the database before running your program. For example, to use ''nt'' with ''blastn'':
  
Line 19: Line 20:
 </code> </code>
  
-<html> +==== Notes ====
-<hr /> +
-</html> +
 ¹ Use the following to determine the date of a BLAST database: ''/export/apps/blast/2.7.1+/bin/blastdbcmd -info -db nt | grep Date'' ¹ Use the following to determine the date of a BLAST database: ''/export/apps/blast/2.7.1+/bin/blastdbcmd -info -db nt | grep Date''
biological-databases.txt · Last modified: 2023/10/09 11:18 by aorth